bionty.ExperimentalFactor¶
- class bionty.ExperimentalFactor(name: str, ontology_id: str | None, abbr: str | None, synonyms: str | None, description: str | None, parents: list[ExperimentalFactor], public_source: PublicSource | None)¶
Bases:
BioRegistry
,TracksRun
,TracksUpdates
Experimental factors - Experimental Factor Ontology.
Notes
For more info, see tutorials Manage biological registries and ExperimentalFactor.
Bulk create ExperimentalFactor records via
from_values
.Examples
>>> standard_name = bionty.ExperimentalFactor.public().standardize(["scRNA-seq"]) >>> record = bionty.ExperimentalFactor.from_public(name=standard_name)
Fields
- created_at DateTimeField
Time of creation of record.
- created_by ForeignKey
Creator of record, a
User
.
- run ForeignKey
Last run that created or updated the record, a
Run
.
- updated_at DateTimeField
Time of last update to record.
- id AutoField
Internal id, valid only in one DB instance.
- uid CharField
A universal id (hash of selected field).
- name CharField
Name of the experimental factor.
- ontology_id CharField
Ontology ID of the experimental factor.
- abbr CharField
A unique abbreviation of experimental factor.
- synonyms TextField
Bar-separated (|) synonyms that correspond to this experimental factor.
- description TextField
Description of the experimental factor.
- molecule TextField
Molecular experimental factor, parsed from EFO.
- instrument TextField
Instrument used to measure the experimental factor, parsed from EFO.
- measurement TextField
Phenotypic experimental factor, parsed from EFO.
- public_source ForeignKey
PublicSource
this experimental_factors associates with.
- previous_runs ManyToManyField
Sequence of runs that created or updated the record.
- parents ManyToManyField
Parent experimental factor records.
- artifacts ManyToManyField
Artifacts linked to the experimental_factors.
Methods