lamindb.core.datasets.anndata_file_pbmc68k_test¶
- lamindb.core.datasets.anndata_file_pbmc68k_test()¶
Modified from scanpy.collections.pbmc68k_reduced().
Additional slots were added for testing purposes. Returns the filepath.
To reproduce:
pbmc68k = ln.core.datasets.anndata_pbmc68k_reduced() pbmc68k_test = pbmc68k[:30, :200].copy() pbmc68k_test.raw = pbmc68k_test[:, :100] pbmc68k_test.obsp["test"] = sparse.eye(pbmc68k_test.shape[0], format="csr") pbmc68k_test.varp["test"] = sparse.eye(pbmc68k_test.shape[1], format="csr") pbmc68k_test.layers["test"] = sparse.csr_matrix(pbmc68k_test.shape) pbmc68k_test.layers["test"][0] = 1. pbmc68k_test.write("pbmc68k_test.h5ad")
- Return type:
Path