bionty.Organism¶
- class bionty.Organism(name: str, taxon_id: str | None, scientific_name: str | None)¶
Bases:
BioRegistry
,TracksRun
,TracksUpdates
Organism - NCBI Taxonomy, Ensembl Organism.
Notes
For more info, see tutorials Manage biological registries and Organism.
Examples
>>> record = bionty.Organism.from_public(name="rabbit")
Fields
- created_at DateTimeField
Time of creation of record.
- created_by ForeignKey
Creator of record, a
User
.
- run ForeignKey
Last run that created or updated the record, a
Run
.
- updated_at DateTimeField
Time of last update to record.
- id AutoField
Internal id, valid only in one DB instance.
- uid CharField
A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.
- name CharField
Name of a organism, required field.
- ontology_id CharField
NCBI Taxon ID.
- scientific_name CharField
Scientific name of a organism.
- public_source ForeignKey
PublicSource
this record associates with.
- previous_runs ManyToManyField
Sequence of runs that created or updated the record.
- parents ManyToManyField
Parent organism records.
- artifacts ManyToManyField
Artifacts linked to the organism.
Methods