lamindb.core.datasets.anndata_human_immune_cells¶
- lamindb.core.datasets.anndata_human_immune_cells(populate_registries=False)¶
Cross-tissue immune cell analysis reveals tissue-specific features in humans.
From: https://cellxgene.cziscience.com/collections/62ef75e4-cbea-454e-a0ce-998ec40223d3 # noqa Collection: Global
To reproduce the subsample:
adata = sc.read('Global.h5ad') adata.obs = adata.obs[['donor_id', 'tissue', 'cell_type', 'assay', 'tissue_ontology_term_id', 'cell_type_ontology_term_id', 'assay_ontology_term_id']].copy() sc.pp.subsample(adata, fraction=0.005) del adata.uns["development_cache_ontology_term_id_colors"] del adata.uns["sex_ontology_term_id_colors"] adata.write('human_immune.h5ad')
- Return type:
AnnData